PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005745.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 403aa    MW: 42749.1 Da    PI: 4.2501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005745.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-1958107255
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Do005745.1  58 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 107
                 789******.7*********33....35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.34E-3057114No hitNo description
SMARTSM003804.3E-3658121IPR001471AP2/ERF domain
PfamPF008471.0E-1358107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2758114IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1958115IPR016177DNA-binding domain
PROSITE profilePS5103219.59958115IPR001471AP2/ERF domain
PRINTSPR003675.8E-85970IPR001471AP2/ERF domain
PRINTSPR003675.8E-88197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MARKRKASDS VDIEGANDVL NSPPPLPSMD TCAWASSGSM AAAAVAAAAA QQQQGRKRFV  60
GVRQRPSGRW VAEIKDTIQK IRVWLGTFDT AEEAARAYDE AACLLRGSNT RTNFWPRPTP  120
AAAAAADVHP VQPPPPPAVA SSSPTPALPS KVTNLLLLQL RARNQQLFNF NATAAQQEAA  180
LLQGPLCEEP YGGGNGEECT FQVDDYLSYD CGSSDGNSSQ EMEDEEEKEE ELDFQFMDQH  240
AASPAAGCEG GGLCSPFEVV AAELGGAVEA DDGEPDSAVQ ELMRRRMDYE RKISASLYAL  300
SGVSECLRMR HGAGAAAGMR DQLSGLREAC RKKQRDAVQV QQPHQEQAPS PEEAAEDGNK  360
AAQEECSVGG GAPEAASSSS EASDCDGDSD VLLWSSLDLA PIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1357114462ATERF1
3gcc_A3e-1357114462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0671091e-104BT067109.1 Zea mays full-length cDNA clone ZM_BFb0192O05 mRNA, complete cds.
GenBankJX4699201e-104JX469920.1 Zea mays subsp. mays clone UT3176 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442409.11e-144hypothetical protein SORBIDRAFT_08g019530
TrEMBLC5YQS81e-144C5YQS8_SORBI; Putative uncharacterized protein Sb08g019530
STRINGSb08g019530.11e-144(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-22related to AP2 11